Siddhant Bhat
ML Engineer | Deep Learning & Bioinformatics
New to Contra
Siddhant is ready for their next project!
Sim Studio is a work-in-progress 3D creative game where users can build whatever they like and have it animated in a simulation world.
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A deep learning system that predicts molecular functions (Gene Ontology terms) for proteins from sequence and structural features. Trained on 250K+ proteins across 8,124 functional labels.
Architecture combines ESM-2 language model embeddings (320-dim) with 359 AlphaFold-derived structural features including pLDDT confidence, predicted alignment error, and physicochemical descriptors. Achieves +1.8% micro-F1 improvement over baseline with strong gains on rare protein functions.
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A deep learning system that predicts the assembly order of protein complexes using Graph Neural Networks. Trained on the Marsh-2013 benchmark dataset, achieving Kendall τ=0.73 — competitive with published research.
Built in PyTorch with full end-to-end pipeline: data preprocessing, GNN architecture design, ablation studies, and interactive visualization dashboard. Deployed on Hugging Face for live inference.
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Phylo is a Wordle-inspired game available at playphylo.org (https://playphylo.org) which is intended to teach users about animals and their phylogenetic relationships.
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